Hormone Health, Podcast

280// Birth Control Side Effects: What They’re Doing to Your Gut, Thyroid, and Brain – with Leisha Drews, FDN-P

September 4, 2025

Birth Control Side Effects on Gut, Thyroid & Brain

You’ve heard the pitch.
“Birth control is safe.”
“Maybe a little weight gain. Maybe mood swings.”
No big deal… right?

But here’s the question no one asks:

Do you know what’s actually happening inside your body on birth control?

Today, I’m pulling back the curtain. We’re talking real biology, brain changes, thyroid slowdowns, gallbladder strain, gut disruption, and long-term fertility. We’re also talking options—birth control different types, birth control no hormones, and how to get off safely when you’re ready.

I’m Allison Jordan—functional medicine practitioner, gut-hormone nerd, and myth-buster. I’ve helped 150+ women ditch confusion and heal deeper. This guide blends research, clinical insight, and personal experience. Fast. Clear. No fluff.

Let’s go. ⚡️


Birth Control 101: How Does It Really Work?

You’ll see many birth control types in the wild:

  • Birth control pills

  • Birth control patch

  • Birth control shot

  • Birth control implant in arm (aka the “birth control arm” implant)

  • Hormonal IUDs

  • Copper IUD (birth control no hormones)

Different packages. Same goal.

Here’s the mechanism behind most birth control methods:

  1. Stop ovulation.
    Synthetic hormones signal “you’re not ovulating” or “you’re already pregnant.” No ovulation, no egg.

  2. Change cervical fluid.
    It gets thicker. Sperm can’t swim. No “slip ’n slide.”

  3. Thin the uterine lining.
    If an egg does meet sperm, implantation is harder.

This is birth control stripped down. If you’ve wondered birth control how does it work, that’s it. Simple to say. Not simple in your body.

Key truth: Low-dose hormonal birth control isn’t “cute.” It mimics menopause-level hormones. That’s why you often feel off. Your biology notices.


The Side Effects Doctors Downplay (But You Feel)

Let’s be honest. You’ve heard the basics:

  • Weight gain

  • Mood swings

  • Lower libido

But birth control side effects go way deeper. This is what I see most:

Brain & Mood

  • Altered stress response.

  • Increased anxiety or depression risk.

  • Memory changes.

  • Shifted attraction patterns (yes, for real).

Thyroid & Metabolism

  • Less available thyroid hormone.

  • More fatigue, brain fog, constipation, and stubborn weight.

  • Cold hands and feet. Hair changes.

Gallbladder & Bile

  • Higher risk of gallstones and gallbladder issues.

  • Poor bile flow = poor fat digestion + sluggish detox.

Gut & Immunity

  • Dysbiosis. Bloating. Constipation or loose stools.

  • Leaky gut dynamics.

  • Higher inflammation. Higher histamine symptoms.

Nutrient Depletions

  • B vitamins (energy, mood, detox).

  • Zinc & selenium (thyroid, skin, immunity).

  • Magnesium (sleep, stress, bowels).

  • Folate (fertility, methylation).

These aren’t random. They’re predictable birth control pills side effects and also show up with the birth control patch, birth control shot, and hormonal IUDs. Different route. Same chemistry.

If you’ve thought, “It’s all in my head,” it’s not. Your body is talking.

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Progesterone vs. Progestin: Why You Feel “Not Yourself”

Your body makes progesterone after ovulation. It calms the brain. Helps sleep. Supports thyroid. Protects breasts. Grows scalp hair. It’s the “I can handle life” hormone.

Hormonal birth control uses progestin, not progesterone. Progestin ≠ progesterone.

Progestin can:

  • Raise blood pressure

  • Increase anxiety or low mood

  • Trigger hair loss

  • Worsen acne for some

  • Nudge breast cancer risk in certain contexts

Meanwhile, you miss two weeks of your own progesterone every cycle because you’re not ovulating.

Bottom line: You trade the real thing (progesterone) for a look-alike (progestin). Your body knows the difference.


IUDs, the Implant, the Patch, the Shot: Quick Truths

Let’s hit the popular birth control options.

Hormonal IUDs

  • Lower daily hormone dose, but still systemic.

  • Can still blunt ovulation and shift mood, thyroid, and gut.

  • May feel “lighter” than pills—but the trade-offs remain.

Copper IUD (birth control no hormones)

  • No synthetic hormones.

  • Works by causing inflammation in the uterus to block implantation.

  • Common early side effects: heavier, more painful periods.

  • Copper can promote estrogen dominance.

  • Watch for anemia risk from heavier bleeding.

Birth control implant in arm (“birth control arm”)

  • Progestin released continuously.

  • Convenient.

  • Side effects often include irregular bleeding, mood swings, acne, and hair changes.

  • Same thyroid, nutrient, and gut concerns apply.

Birth control patch

  • Delivers hormones through the skin.

  • Similar side effect profile to pills.

  • Adhesive sensitivities happen. Dosing is steady.

Birth control shot (Depo)

  • Large dose at once.

  • Often linked with weight gain and mood shifts.

  • Can suppress ovulation long after stopping.

There’s no free lunch. With birth control types, you choose your trade-offs. Informed consent means knowing them.


The Gallbladder: The Most Ignored Collateral Damage

I have to highlight this. Because almost no one does.

Your gallbladder stores and releases bile. Bile digests fats, clears estrogen, and acts like a gentle antimicrobial in the gut. It supports detox. It keeps SIBO at bay. It helps you absorb fat-soluble vitamins.

Hormonal birth control can:

  • Thicken bile.

  • Slow gallbladder emptying.

  • Increase gallstone risk.

  • Lead to gallbladder removal in some women.

No gallbladder = lifelong changes to digestion and detox.

If you struggle with right-shoulder pain, nausea after fats, or floating stools, pay attention. This isn’t “just in your head.” It’s physiology.


Thinking of Coming Off? Start Here (Don’t Panic)

You do not have to white-knuckle your exit. Use a plan. Go slow. Support root causes.

Before stopping, for 8–12 weeks:

  • Rebuild minerals daily.

    • Food first: red meat, shellfish, eggs, avocado, olives, leafy greens, pumpkin seeds, cacao, sea salt.

    • Consider targeted zinc, magnesium glycinate, and a methyl-friendly B complex.

  • Love your liver.

    • Protein each meal.

    • Brassica veggies (broccoli, arugula, cauliflower).

    • Lemon water.

    • Ditch fragrance, plastics, and endocrine disruptors.

  • Stabilize blood sugar.

    • Eat protein + fiber + healthy fat each meal.

    • Coffee with a meal, not solo.

    • Move after meals.

  • Open the gut.

    • Daily bowel movements are non-negotiable.

    • Hydrate. Magnesium can help.

    • Add gentle bitters before meals if tolerated.

When stopping:

  • Expect a transition. Breakouts, cycle wonkiness, or heavier bleeds can happen.

  • Track data: basal temps, cervical fluid, symptoms.

  • Give your body 3–6 cycles to recalibrate.

  • If symptoms roar, look deeper: gut infections, mold, heavy metals, thyroid, and nutrient deficits.

This is what I guide clients through. Step by step. It works.


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What About “Natural” Birth Control? Can It Actually Work?

Short answer: yes—if you do it right.

Fertility Awareness Method (FAM) isn’t “guessing your fertile days.” It’s a system. You learn your signals. You confirm ovulation. You plan accordingly.

When used correctly, FAM can reach 98–99% effectiveness. That’s not a typo.

Why FAM works:

  • You track biomarkers (cervical fluid, basal temps, LH).

  • You confirm fertile and infertile windows.

  • You use protection or abstain on fertile days.

  • You and your partner share the responsibility. Grown-up style. 😉

Tools to consider:

  • A basal body thermometer.

  • An app that focuses on education, not prediction.

  • Optional: LH strips to spot the surge.

For the “I’m terrified to get pregnant” crowd:
You can layer methods. Condoms + FAM. Diaphragm + FAM. Or keep a copper IUD while you replenish, then transition out with support. There are smart ways to do this.


Expectation vs. Reality: Why Pills “Fixed” Your Period (But Didn’t Heal It)

I get why your doctor gave you birth control pills for acne, cramps, or irregular cycles. Pills can suppress symptoms. That feels like relief.

But suppression isn’t healing.

What the pill often hides:

  • Gut infections or dysbiosis

  • Estrogen dominance

  • Low progesterone from anovulation

  • Thyroid dysfunction

  • Mineral deficiencies

  • Blood sugar swings

  • Histamine intolerance

  • Liver overload

When you stop, the real problem returns. Sometimes louder. That’s not “your broken body.” That’s your body asking for root-cause care.

Translation: If you want clear skin, painless periods, and steady moods without meds, fix the gut, feed your thyroid, balance minerals, and support ovulation. Doable. Predictable. Sustainable.


Rapid-Fire FAQ: Your Biggest Birth Control Questions

Are all hormonal methods equal?
No. Dosage and delivery differ. But birth control methods using progestin share similar downstream effects.

Is the copper IUD “clean”?
It’s hormone-free but creates uterine inflammation and can worsen bleeding, anemia, and estrogen dominance. It’s a trade-off.

Will I get pregnant right away after stopping?
Some do. Many don’t. Give yourself time to ovulate consistently. Replenish first if you can—especially if you want a healthy pregnancy.

My doctor says my labs are “normal,” but I feel awful.
Standard labs miss early thyroid and nutrient patterns. Functional ranges tell more. Symptoms matter. You do, too.

What if I have to stay on birth control now?
Support your body anyway. Rebuild minerals, stabilize blood sugar, reduce toxins, and love your liver. You’ll feel the difference.

What about the birth control patch vs. birth control shot vs. birth control pills?
Same idea. Different delivery. Patch = transdermal. Shot = large dose with longer tail. Pills = daily systemic dose. Side effect profiles overlap.

Is the birth control implant in arm better?
It’s convenient. Side effects can still bite. Consider mood, skin, bleeding patterns, and metabolism. It still uses progestin.


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My Story + Why I Coach This Way

I used hormonal birth control for a year. I knew the trade-offs. I chose it anyway. It made sense for that season.

That’s the point.

This isn’t moral. It’s medical. It’s personal. It’s yours.

I’m here for informed consent and smarter plans—whether you stay on, step down, or step off. I’ve walked this with clients for years. We build resilience first. We reduce symptoms fast. Then we make strategic moves.

Your body isn’t fragile. It’s responsive. Give it what it needs, and it responds beautifully.


Your Next Steps (Make This Simple)

You don’t need to figure this out alone. Start small. Stack wins.

This week:

  • Add a protein-rich breakfast.

  • Drink lemon water on waking.

  • Swap fragrance for fragrance-free.

  • Eat a mineral-rich meal daily.

  • Go for a 10-minute post-meal walk.

This month:

  • Begin a targeted mineral protocol.

  • Track sleep, energy, bowels, and mood.

  • Start cycle tracking (temps + cervical fluid).

  • Audit skincare, home cleaners, and plastics.

  • Book labs if symptoms are strong.

When ready:

  • Plan a guided transition off your current method.

  • Layer protection as needed while you learn FAM.

  • Address gut, thyroid, and nutrient gaps.

  • Re-test. Refine. Thrive.

You deserve a plan that respects your biology and your life.


The Real Takeaway

  • Birth control works. But how it works has a cost.

  • Those “mystery” symptoms? They’re not random.

  • You can choose birth control options more wisely.

  • You can come off safely—with support.

  • You can feel like yourself again.

No fear. Just facts + strategy.


Ready to Heal Smarter? (CTA)

If you’re done guessing and want a clear, root-cause roadmap—join the Better Belly Blueprint. Inside, you’ll get my step-by-step system to stabilize hormones, rebuild your gut, and support thyroid + detox so you can transition off birth control with confidence (or feel better while you’re on it).

You’ll also get access to my Lab Chooser Tool to identify what your body needs now. No more random supplements. No more “wait and see.”

Tap here to get started and make your next step the right step.
Let’s make health easy again. 💛

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*This episode was first published at BetterBellyTherapies.com/280

280// Birth Control Side Effects: What They’re Doing to Your Gut, Thyroid, and Brain – with Leisha Drews, FDN-P

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